.. java:import:: ch.epfl.leb.alica.interfaces Analyzer

.. java:import:: ch.epfl.leb.alica.interfaces.analyzers AnalyzerStatusPanel

.. java:import:: ij.gui Roi

.. java:import:: ij.process ShortProcessor

.. java:import:: java.util ArrayList

.. java:import:: java.util HashMap

SpotCounter
===========

.. java:package:: ch.epfl.leb.alica.acpack.analyzers.spotcounter
   :noindex:

.. java:type:: public class SpotCounter implements Analyzer

   :author: stefko

Constructors
------------
SpotCounter
^^^^^^^^^^^

.. java:constructor:: public SpotCounter(int noise_tolerance, int box_size, boolean live_view)
   :outertype: SpotCounter

   Initialize the analyzer

   :param noise_tolerance: required height of peak around surroundings
   :param box_size: size of the scanning box in pixels
   :param live_view: if true, live preview is shown

Methods
-------
dispose
^^^^^^^

.. java:method:: @Override public void dispose()
   :outertype: SpotCounter

getBatchOutput
^^^^^^^^^^^^^^

.. java:method:: @Override public double getBatchOutput()
   :outertype: SpotCounter

getIntermittentOutput
^^^^^^^^^^^^^^^^^^^^^

.. java:method:: @Override public double getIntermittentOutput()
   :outertype: SpotCounter

getName
^^^^^^^

.. java:method:: @Override public String getName()
   :outertype: SpotCounter

getShortReturnDescription
^^^^^^^^^^^^^^^^^^^^^^^^^

.. java:method:: @Override public String getShortReturnDescription()
   :outertype: SpotCounter

getStatusPanel
^^^^^^^^^^^^^^

.. java:method:: @Override public AnalyzerStatusPanel getStatusPanel()
   :outertype: SpotCounter

processImage
^^^^^^^^^^^^

.. java:method:: @Override public void processImage(Object image, int image_width, int image_height, double pixel_size_um, long time_ms)
   :outertype: SpotCounter

setROI
^^^^^^

.. java:method:: @Override public void setROI(Roi roi)
   :outertype: SpotCounter